I had a problem with one of the lines and it ended up being the orientation of the turbo with the manifold. The mainfold was already attached and I did not want to take it off. Thankfully I was able to loosen up the bolt for the clamp that holds the manifold and turbo together. With that loose I could slightly rotate the body of the turbo so things lined up. I then tightened up the clamp bold and everything after that wasn't so bad.Almost done.
I am having a hard time getting the coolant line to the block to line up and screwed back in. Taking a break so hopefully a rested mind and body I can get it.